Sound effects like Football carrots bumping into each other and groaning, Stewart yelling "Just stay out of the way" and panting, Carrot hitting the ground and moaning and Football flying in the air, Morty saying "Hot Dogs", Stewart jumping in the air to grab the football and hitting Morty and audience gasping and Football hitting Morty, Stewart turning his back to his Dad in the Hospital, Stewart's Dad tossing the Toy Train on the bed, Football hitting books off the shelf, Helicopter hitting the road and tossing out the carpet, Stewart and Factory employees whimpering and screaming, most of Stewart's dialogue while entering the train, Gabe pushing the lever sending Stewart flying into his seat, Famous Stewart shallowing the Cheese, Stewart's mumbling as Working Pete sits on him, Gabe and Stewart falling on the train while Stewart screams and hits the floor, Stewart yelling while getting fresh air on the train while the "What If" noises are heard instead, the dialogue during the song "Oh Christmas Me", Stewart's dialogue while going from the train to the Toy Factory (some of it actually), Donna yelling for Stewart, the background sound effects in the Jingle version of the What Have we Learned Jingle song, etc. were left silent
The Get Well Toy Train's voice was high pitched
The Wings Shop owner's voice was low pitched
Crash noises are heard when all the Toy trains and boxes hit the ground everywhere while you can't hear it as much in the final version.
The "Bedtime Songs with Junior" title card is different and it's still present while Junior asks for water at the end
During the Squeezy Cheesy Dream song, only the back up vocals sing while Famous Stewart's singing lines are silent and the Announcer is left silent as well while an odd sound recording of Jim Gourdley yelling "Cut" was put in
Larry says "And he loves you very much" at the end and him saying "And he has got a plan for your life" wasn't animated yet and after Bob and Larry say Goodbye, it immeditally transitions to the credits as Bob rising up and down wasn't animated either.
A whole different version for "Meant to Be" plays on the credits and a lot of the song lyrics are faintly heard and mainly the Chorus is sang by back up vocals
After the credits, a Huhu logo appears while Hawaii Animation Studios worked with Big idea during the 2nd prototype and the final
The only ever "Christmas SingAlong Songs" trailer plays at the end
A look for all these great Veggie Tales videos trailer from 2010 plays at the very end